4 Jun 2011

Training Programmes


Advanced Diploma in Bioinformatics

MODULE I  

Introduction to System Biology
 1. Basics of Biology
2. Structure and function of cell
3. Structure and function of Nucleic acid and Protein Biochemistry Approaches
4. Molecular Biology
 5. Central Dogma (Transcription and Translation)
 6. Molecular Techniques
 7. Biotechnology and Genetic Engineering
 8. Scopes and Applications
9. Commercial aspects to Patenting and IPR  

MODULE II  

Introduction to Information Technology
 1. Introduction to Operating System
2. MS. Windows and Linux
3. Networking and Internet essential
4. Introduction to Software engineering
5. Softwares in Information Technology
6. C / C++
7. PERIL / BIOPERL
8. Basics of JAVA  

MODULE III   BOINFORMATICS

 Introduction to Bioinformatics 
1. Application, History, Scope and trends
2. Biological databases and their Management 

 Introduction to Bio Databanks 
1. Sequence databanks
2. NCBI - GENBANK
3. EBI - EMBL
4. NIG - DDBJ
5. PIR
6. SWISSPROT
7. Structure databank
8. RCSB PDB  

Introduction to Databases 
1. Sequence Databases
2. Structure databases
3. General databases
4. Microarray, HPRD, ligand, enzyme, microbial, 2D PAGE   Bioinformatics methods pro analysis   

Introduction to Computational Biology 
1. Dynamic Programming Algorithm
2. Computational biology Tools
3. Basics of Genetic algorithm, Neural Network and Artificial intelligences  

Biocomputing   Sequence and organize retrieval 
Similarity search BLAST / FASTA   Sequence alignment 
1. Pair wise Alignment ALIGN / LALIGN
2. Multiple Sequence Alignment - Clustalw / Multalin  

Phylogenetic analysis 
1. Introduction
2. Methods
3. Application  

Genomics   Introduction and Application of
Genomics   Genomics Analysis and Tools 
1. Gene Identification / Prediction: GENSCAN
2. Genome Comparison: PIPMAKER
3. Gene Network Analysis and Annotation: GENEBOY
4. Genetic material Translation: TRANSQ  

Proteomics   Introduction and Application of
Proteomics   Proteomics Analysis and Tools 
1. Protein Identification: PROSITE
2. Motif Analysis: MME
3. Secondary organize prediction: PHD / JPRED
4. Homology modeling: SWISS MODEL / MODELLER
5. Model verification: VERITY 3D / PROCHECK
6. 3D organize visualization: RASMOL I SWISS PDB VIEWER
7. Structure alignment: VAST
8. Structure classification: SCOP  

MODULE IV  

Chemical Information 
1. Introduction, Application, Scope, History and Trends
2. Chemical and Drug Databases
3. Combinatorial Chemistry and its Application
4. High Throughput Screening
5. Chemometrics  

Chemical Software 
1. Chemical Drawing
2. 3D View  

Drug Designing and Discovery Methods 
1. Introduction, Application
2. ADME and Drug Designing Methods
3. Molecular Based
4. Docking
5. QSAR
6. Structure Based Designing  

Introduction to Clinical-informatics 
MODULE  V 

 Bio-industrial Softwares 
1. EMBOSS
2. YASARA
3. VECTOR NTI  

MODULE VI  

Project   Introduction to Biological System 
1. Basics of Biology
2. Structure and function of cell
 3. Structure and function of Nucleic acid and Protein
4. Biochemistry Approaches 5. Molecular biology
6. Central Dogma (Transcription and Translation)  

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